SWC Reader

class dendrotweaks.morphology.io.reader.SWCReader[source]

Bases: object

Reads an SWC file and returns a DataFrame.

static read_file(path_to_swc_file: str) → DataFrame[source]

Read the SWC file and return a DataFrame.

Parameters:

path_to_swc_file (str) – The full path to the SWC file.

Returns:

The DataFrame containing the SWC data

Return type:

pd.DataFrame

static plot_raw_data(df, ax)[source]

Plot the raw data from the SWC file using the DataFrame.

Parameters:

  • df (pd.DataFrame) – The DataFrame containing the SWC data (generated by read_file).

  • ax (matplotlib.pyplot.Axes) – The axes to plot on.