Morphology Factories¶
- dendrotweaks.morphology.io.factories.create_point_tree(source: str | DataFrame) PointTree[source]¶
Create a point tree from either a file path or a DataFrame.
- Parameters:
source (Union[str, DataFrame]) – The source of the SWC data. Can be a file path or a DataFrame.
- Returns:
The point tree representing the reconstruction of the neuron morphology.
- Return type:
- dendrotweaks.morphology.io.factories.create_section_tree(point_tree: PointTree)[source]¶
Create a section tree from a point tree.
- Parameters:
point_tree (PointTree) – The point tree to create the section tree from by splitting it into sections.
- Returns:
The section tree created representing the neuron morphology on a more abstract level.
- Return type:
- dendrotweaks.morphology.io.factories.create_segment_tree(sec_tree)[source]¶
Create a segment tree from a section tree.
- Parameters:
sec_tree (SectionTree) – The section tree to create the segment tree from by splitting it into segments.
- Returns:
The segment tree representing spatial discretization of the neuron morphology for numerical simulations.
- Return type: